Publications

2014

Gong J, Liu W, Zhang J, Miao X, Guo AY#. lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse.Nucleic Acids Res. 2014 Sep;doi:10.1093/nar/gku1000 Online

Zhang HM,Liu T,Liu CJ,Song SY,Zhang XT,Liu W,Jia HB,Xue Y,Guo AY#. AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors.Nucleic Acids Res. 2014 Sep;doi:10.1093/nar/gku887 Online

He XX*, Guo AY*, Xu CR, Chang Y, Xiang GY, Gong J, Dan ZL, Tian DA, Liao JZ, Lin JS. Bioinformatics analysis identifies miR-221 as a core regulator in hepatocellular carcinoma and its silencing suppresses tumor properties.Oncol Rep.2014 Sep;32(3):1200-10. PubMed

Gong J, Shen N, Zhang HM, Zhong R, Chen W, Miao X, Guo AY#. A genetic variant in microRNA target site of TGF- signaling pathway increases the risk of colorectal cancer in a Chinese population. Tumour Biol. 2014 May;35(5):4301-6. PubMed

Shen N, Gong J, Wang Y, Tian J, Qian J, Zou L, Chen W, Zhu B, Lu X, Zhong R, Guo A, Wang L, Miao X. Integrative genomic analysis identifies that SERPINA6-rs1998056 regulated by FOXA/ER is associated with female hepatocellular carcinoma. PLoS One. 2014 Sep 8;9(9):e107246. PubMed

Zhang HM, Kuang S, Xiong X, Gao T, Liu C, Guo AY#. Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases. Brief Bioinform. 2013 ahead of print PubMed

Yan J, Ma Z, Xu X, Guo AY#. Evolution, functional divergence and conserved exon-intron structure of bHLH/PAS gene family. Mol Genet Genomics. 2014 Feb;289(1):25-36. PubMed

Yan J, Jia H, Ma Z, Ye H, Zhou M, Su L, Liu J, Guo AY#. The evolutionary analysis reveals domain fusion of proteins with Frizzled-like CRD domain. Gene. 2014 Jan 1;533(1):229-39. PubMed

2013

Yang J, Duan S, Zhong R, Yin J, Pu J, Ke J, Lu X, Zou L, Zhang H, Zhu Z, Wang D, Xiao H, Guo A, Xia J, Miao X, Tang S, Wang G. Exome sequencing identified NRG3 as a novel susceptible gene of Hirschsprung's disease in a Chinese population. Mol Neurobiol. 2013 Jun;47(3):957-66. PubMed

Wang Y, Fan G, Liu Y, Sun F, Shi C, Liu X, Peng J, Chen W, Huang X, Cheng S, Liu Y, Liang X, Zhu H, Bian C, Zhong L, Lv T, Dong H, Liu W, Zhong X, Chen J, Quan Z, Wang Z, Tan B, Lin C, Mu F, Xu X, Ding Y, Guo AY#, Wang J, Ke W. The sacred lotus genome provides insights into the evolution of flowering plants. Plant J. 2013 Nov;76(4):557-67.PubMed

Zeng J, Liu Y, Liu W, Liu X, Liu F, Huang P, Zhu P, Chen J, Shi M, Guo F, Cheng P, Zeng J, Liao Y, Gong J, Zhang HM, Wang D,Guo AY#, Xiong X#. Integration of transcriptome, proteome and metabolism data reveals the alkaloids biosynthesis in Macleaya cordata and Macleaya microcarpa.PLoS One. 2013;8(9). PubMed

Ma Z, Wu Y, Jin J, Yan J, Kuang S, Zhou M, Zhang Y, Guo AY#. Phylogenetic analysis reveals the evolution and diversification of cyclins in eukaryotes. Mol Phylogenet Evol. 2013;66(3):1002-10. PubMed

2012

Ye H, Liu X, Lv M, Wu Y, Kuang S, Gong J, Yuan P, Zhong Z, Li Q, Jia H, Sun J, Chen Z, Guo AY#. MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia. Nucleic Acids Res. 2012 Jul 1;40(12):5201-5214.PubMed

Zhang HM, Chen H, Liu W, Liu H, Gong J, Wang H, Guo AY#. AnimalTFDB: a comprehensive animal transcription factor database. Nucleic Acids Res. 2012 Jan;40(Database issue):D144-9.PubMed

Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY#. Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis. Hum Mutat. 2012 Jan;33(1):254-63. PubMed   Highlight and editor comments for this paper is on the same issue.

Wang X, Zhu K, Li S, Liao Y, Du R, Zhang X, Shu HB, Guo AY, Li L, Wu M. MLL1, a Histone H3K4 Methyltransferase, Regulates the Expression of TNF-mediated NF-B Downstream Genes. J Cell Sci. 2012;125(Pt 17):4058-66 PubMed

Liu D, Gong J, Dai W, Kang X, Huang Z, Zhang HM, Liu W, Liu L, Ma J, Xia Z, Chen Y, Chen Y, Wang D, Ni P, Guo AY#, Xiong X#. The genome of Ganoderma lucidum provides insights into triterpenes biosynthesis and wood degradation. PLoS One. 2012;7(5):e36146. PubMed

Du X, Han L, Guo AY,Zhao Z. Features of methylation and gene expression in the promoter-associated CpG islands using human methylome data. Comp Funct Genomics. 2012;2012:598987. PubMed

Webb BT, Guo AY, Maher BS, Zhao Z, etc. Meta-analyses of genome-wide linkage scans of anxiety-related phenotypes. Eur J Hum Genet. 2012 Apr 4. doi: 10.1038/ejhg.2012.47. PubMed

Before 2012

Hettema JM, Webb BT, Guo AY, Zhao Z, Maher BS, Chen X, An SS, Sun C, Aggen SH, Kendler KS, Kuo PH, Otowa T, Flint J, van den Oord EJ. Prioritization and association analysis of murine-derived candidate genes in anxiety-spectrum disorders. Biol Psychiatry. 2011 Nov 1;70(9):888-96. PubMed

Liu H*, Liu W*, Liao Y, Cheng L, Liu Q, Ren X, Shi L, Tu X, Wang QK#, Guo AY#. CADgene: a comprehensive database for coronary artery disease genes. Nucleic Acids Res. 2011; 39:D991-6. PubMed

Guo AY, Sun J, Jia P, Zhao Z. A Novel microRNA and transcription factor mediated regulatory network in schizophrenia. BMC Syst Biol. 2010, 4(1):10. PubMed   

Guo AY, Sun J, Jia P, Zhao Z. Network Analysis of EtOH-Related Candidate Genes. Chem Biodivers. 2010, 7(5):1142-1152.PubMed

Jia P, Sun J, Guo AY, Zhao Z. SZGR: a comprehensive schizophrenia gene resource. Mol. Psychiatry. 2010, 15(5):453-62. PubMed

Chen X, Lee G, Maher BS, Fanous AH, Chen J, Zhao Z, Guo A et al. GWA study data mining and independent replication identify cardiomyopathy-associated 5 (CMYA5) as a risk gene for schizophrenia. Mol. Psychiatry. 2010 (In press)PubMed

He K, Guo AY, Gao G, Zhu QH, Liu XC, Zhang H, Chen X, Gu X, Luo J. Computational identification of plant transcription factors and the construction of the PlantTFDB database. Methods Mol Biol. 2010; 674:351-68.PubMed

Guo AY, Sun J, Riley BP, Thiselton DL, Kendler KS, Zhao Z. The dystrobrevin-binding protein 1 gene: features and networks. Mol. Psychiatry. 2009, 14:18-29. IF=12.5PubMed

Guo AY, Webb BT, Miles MF, Zimmerman MP, Kendler KS, Zhao Z. ERGR: An ethanol-related gene resource. Nucleic Acids Res. 2009, 37:D840-5. PubMed

Clarke RA, Zhao Z, Guo AY, Roper K, Teng L, Fang ZM, Samaratunga H, Lavin MF, Gardiner RA. New genomic structure for prostate cancer specific gene PCA3 within BMCC1: implications for prostate cancer detection and progression. PLoS One 2009, 4(3):e4995.PubMed

Guo AY, Chen X, Gao G, Zhang H, Zhu QH, Liu XC, Zhong YF, Gu X, He K, Luo J. PlantTFDB: a Comprehensive Plant Transcription Factor Database. Nucleic Acids Res. 2008, 36:D966-9. PubMed

Guo AY, Zhu QH, Gu X, Ge S, Yang J, Luo J. Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family. Gene. 2008, 418(1-2):1-8. PubMed

Guo AY, Zhu QH, Chen X, Luo JC. GSDS: a Gene Structure Display Server. Yi Chuan. 2007 29(8):1023-6. PubMed

Zhu QH, Guo AY, Gao G, Zhong YF, Xu M, Huang M, Luo J. DPTF: a database of poplar transcription factors. Bioinformatics. 2007, 23 (10):1307-8. PubMed

Gao G, Zhong Y, Guo A,Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J. DRTF: a database of rice transcription factors. Bioinformatics. 2006, 22(10):1286-7.PubMed

Guo A, He K, Liu D, Bai S, Gu X, Wei L, Luo J. DATF: a database of Arabidopsis transcription factors. Bioinformatics. 2005, 21(10):2568-9. PubMed   Cited:128 times

Zhong Y, Guo A, Li C, Zhuang B, Lai M, Wei C, Luo J, Li Y. Identification of a naturally occurring recombinant isolate of Sugarcane mosaic virus causing maize dwarf mosaic disease. Virus Genes. 2005, 30(1):75-83. PubMed